plot_cluster: Visualize cluster labels on locations.

In shangll123/SpatialPCA: Spatially Aware Dimension Reduction for Spatial Transcriptomics

Visualize cluster labels on locations.

Description

This function visualizes cluster labels on locations.

Usage

plot_cluster(
  location,
  clusterlabel,
  pointsize = 3,
  text_size = 15,
  title_in,
  color_in,
  legend = "none"
)

Arguments

location	A n by k matrix of spot locations.
clusterlabel	A vector of cluster labels for spots.
pointsize	An integer, the point size of each spot.
title_in	A character string, the title you want to display at the top of the figure.
color_in	A vector of colors for each cluster.
legend	A character string, the position of the figure legend. Select from "top", "bottom","left" or "right".
textsize	An integer, the text size in the legend.

Value

A ggplot object.

shangll123/SpatialPCA documentation built on April 17, 2024, 3:15 a.m.