fx_CHAOS: Calculate CHAOS score to measure clustering performance.
In shangll123/SpatialPCA: Spatially Aware Dimension Reduction for Spatial Transcriptomics
View source: R/SpatialPCA_utilties.R
fx_CHAOS R Documentation
Calculate CHAOS score to measure clustering performance.
Description
CHAOS score measures the spatial continuity of the detected spatial domains.
Lower CHAOS score indicates better spatial domian clustering performance.
Usage
fx_CHAOS(clusterlabel, location)
Arguments
clusterlabel
Cluster labels.
location
A n by k matrix of spatial locations.
Value
A numeric value for CHAOS score.
shangll123/SpatialPCA documentation built on April 17, 2024, 3:15 a.m.
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View source: R/SpatialPCA_utilties.R
| fx_CHAOS | R Documentation |
Calculate CHAOS score to measure clustering performance.
Description
CHAOS score measures the spatial continuity of the detected spatial domains. Lower CHAOS score indicates better spatial domian clustering performance.
Usage
fx_CHAOS(clusterlabel, location)
Arguments
clusterlabel |
Cluster labels. |
location |
A n by k matrix of spatial locations. |
Value
A numeric value for CHAOS score.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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