fx_PAS: Calculate PAS score to measure clustering performance.
In shangll123/SpatialPCA: Spatially Aware Dimension Reduction for Spatial Transcriptomics
View source: R/SpatialPCA_utilties.R
fx_PAS R Documentation
Calculate PAS score to measure clustering performance.
Description
PAS score measures the randomness of the spots that located outside of the spatial region where it was clustered to.
Lower PAS score indicates better spatial domian clustering performance.
Usage
fx_PAS(clusterlabel, location)
Arguments
clusterlabel
Cluster labels.
location
A n by k matrix of spatial locations.
Value
A numeric value for PAS score.
shangll123/SpatialPCA documentation built on April 17, 2024, 3:15 a.m.
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View source: R/SpatialPCA_utilties.R
| fx_PAS | R Documentation |
Calculate PAS score to measure clustering performance.
Description
PAS score measures the randomness of the spots that located outside of the spatial region where it was clustered to. Lower PAS score indicates better spatial domian clustering performance.
Usage
fx_PAS(clusterlabel, location)
Arguments
clusterlabel |
Cluster labels. |
location |
A n by k matrix of spatial locations. |
Value
A numeric value for PAS score.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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