louvain_clustering: Obtain clustering cluster labels through louvain method.
In shangll123/SpatialPCA: Spatially Aware Dimension Reduction for Spatial Transcriptomics
View source: R/SpatialPCA_utilties.R
louvain_clustering R Documentation
Obtain clustering cluster labels through louvain method.
Description
This function performs louvain clustering on input low dimensional components.
Usage
louvain_clustering(clusternum, latent_dat, knearest = 100)
Arguments
clusternum
The desired number of clusters the user wants to obtain.
latent_dat
A d by n matrix of low dimensional components, d is number of PCs, n is number of spots.
knearest
An integers, number of nearest neighbors for KNN graph construction in louvain clustering.
Value
The cluster labels.
shangll123/SpatialPCA documentation built on April 17, 2024, 3:15 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/SpatialPCA_utilties.R
| louvain_clustering | R Documentation |
Obtain clustering cluster labels through louvain method.
Description
This function performs louvain clustering on input low dimensional components.
Usage
louvain_clustering(clusternum, latent_dat, knearest = 100)
Arguments
clusternum |
The desired number of clusters the user wants to obtain. |
latent_dat |
A d by n matrix of low dimensional components, d is number of PCs, n is number of spots. |
knearest |
An integers, number of nearest neighbors for KNN graph construction in louvain clustering. |
Value
The cluster labels.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.