refine_cluster_10x: Refine clustering results for 10x ST or Visium data.
In shangll123/SpatialPCA: Spatially Aware Dimension Reduction for Spatial Transcriptomics
View source: R/SpatialPCA_utilties.R
refine_cluster_10x R Documentation
Refine clustering results for 10x ST or Visium data.
Description
This function refines spatial clustering of ST or Visium data.
Usage
refine_cluster_10x(clusterlabels, location, shape = "square")
Arguments
clusterlabels
The cluster label obtained (e.g. from louvain method or walktrap method).
location
A n by 2 location matrix of spots.
shape
Select shape='hexagon' for Visium data, 'square' for ST data.
Value
The refined cluster labels.
shangll123/SpatialPCA documentation built on April 17, 2024, 3:15 a.m.
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View source: R/SpatialPCA_utilties.R
| refine_cluster_10x | R Documentation |
Refine clustering results for 10x ST or Visium data.
Description
This function refines spatial clustering of ST or Visium data.
Usage
refine_cluster_10x(clusterlabels, location, shape = "square")
Arguments
clusterlabels |
The cluster label obtained (e.g. from louvain method or walktrap method). |
location |
A n by 2 location matrix of spots. |
shape |
Select shape='hexagon' for Visium data, 'square' for ST data. |
Value
The refined cluster labels.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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