Files in shengqh/ChIPQC
Quality metrics for ChIPseq data
.Rbuildignore
.gitignore
ChIPQC.Rproj
DESCRIPTION
NAMESPACE
R/ChIPQC_IF.R
R/ChIPQCexperiment-class.R
R/ChIPQCsample-class.R
R/dbaplots.R
R/plots.r
R/report.r
R/sampleQC.R
R/utilities.R
README.md
data/blacklist_hg19.RData
data/datalist
data/example_QCexperiment.RData
data/tamoxifen_QC.RData
inst/CITATION
inst/NEWS.Rd
inst/doc/ChIPQCSampleReport.pdf
inst/doc/index.html
inst/extdata/blacklist_hg19.bed
inst/extdata/example_QCexperiment.csv
inst/extdata/tamoxifenQC.csv
man/ChIPQC-data.Rd
man/ChIPQC-package.Rd
man/ChIPQC.Rd
man/ChIPQCexperiment-class.Rd
man/ChIPQCreport.Rd
man/ChIPQCsample-class.Rd
man/FragmentLengthCrossCoverage-methods.Rd
man/Normalisedaveragepeaksignal-methods.Rd
man/QCannotation-methods.Rd
man/QCcontrol-methods.Rd
man/QCdba-methods.Rd
man/QCmetadata-methods.Rd
man/QCmetrics-methods.Rd
man/QCsample-methods.Rd
man/ReadLengthCrossCoverage-methods.Rd
man/RelativeCrossCoverage-methods.Rd
man/averagepeaksignal-methods.Rd
man/coveragehistogram-methods.Rd
man/crosscoverage-methods.Rd
man/duplicateRate-methods.Rd
man/duplicates-methods.Rd
man/flagtagcounts-methods.Rd
man/fragmentlength-methods.Rd
man/frip-methods.Rd
man/mapped-methods.Rd
man/peaks-methods.Rd
man/plotCC-methods.Rd
man/plotCorHeatmap-methods.Rd
man/plotCoverageHist-methods.Rd
man/plotFribl-methods.Rd
man/plotFrip-methods.Rd
man/plotPeakProfile-methods.Rd
man/plotPrincomp-methods.Rd
man/plotRap-methods.Rd
man/plotRegi-methods.Rd
man/plotSSD-methods.Rd
man/readlength-methods.Rd
man/reads-methods.Rd
man/regi-methods.Rd
man/ribl-methods.Rd
man/rip-methods.Rd
man/ssd-methods.Rd
vignettes/ChIPQC.Rnw
vignettes/ChIPQC.bib
