ReadLengthCrossCoverage-methods: Retrieve the cross coverage values without extending reads

In shengqh/ChIPQC: Quality metrics for ChIPseq data

Retrieve the cross coverage values without extending reads

Description

Retrieve the cross coverage values without extending reads.

Methods

signature(object = "ChIPQCexperiment")

Retrieve a vector of cross-coverage values for all samples in a ChIP-seq experiment, with no shift.

signature(object = "list")

Retrieve a vector of cross-coverage values for all samples in a list of ChIPQCsample objects, with no shift.

signature(object = "ChIPQCsample")

Retrieve the cross-coverage value for a sample, with no shift.

Author(s)

Thomas Carroll and Rory Stark

See Also

ChIPQC-package, ChIPQCexperiment, ChIPQCsample

Examples

data(example_QCexperiment)
ReadLengthCrossCoverage(exampleExp)
ReadLengthCrossCoverage(QCsample(exampleExp,1))

shengqh/ChIPQC documentation built on Feb. 27, 2023, 10:51 p.m.