plotPeakProfile-methods: Generate peak profile plots

In shengqh/ChIPQC: Quality metrics for ChIPseq data

Generate peak profile plots

Description

Generate peak profile plots.

Methods

signature(object = "ChIPQCexperiment", method)

Generate peak profile plots for all the samples in an experiment.

signature(object = "list", method)

Generate peak profile plots for all the samples in a list of ChIPQCsample objects..

signature(object = "ChIPQCsample", method)

Generate peak profile plots for a sample.

Note

plotPeakProfile uses ggplot2 for plotting, and returns a ggplot2 plot dataframe.

Author(s)

Thomas Carroll and Rory Stark

See Also

ChIPQC-package, ChIPQCexperiment, ChIPQCsample

Examples

data(example_QCexperiment)
plotCoverageHist(exampleExp,facetBy=c("Tissue","Factor"))
plotCoverageHist(QCsample(exampleExp,1))
data(tamoxifen_QC)
plotCoverageHist(tamoxifen,facetBy=c("Tissue","Condition"))

shengqh/ChIPQC documentation built on Feb. 27, 2023, 10:51 p.m.