QCannotation-methods: Retrieve an annotation description, or a processed annotation

In shengqh/ChIPQC: Quality metrics for ChIPseq data

Retrieve an annotation description, or a processed annotation

Description

Retrieve an annotation description, or a processed annotation, from a ChIPQCexperiment object.

Methods

signature(object = "ChIPQCexperiment", bRetrieve=FALSE)

Retrieve the annotation. If bRetrieve=FALSE (default), the character string describing the annotation is returned (currently only “hg19” is supported). If bRetrieve=TRUE, a processed annotation is returned (in the form of a list). This can be used in subsequent calls to ChIPQC and/or ChIPQCsample for efficiency purposes.

Author(s)

Rory Stark and Thomas Carroll

See Also

ChIPQC-package, ChIPQCsample, ChIPQCexperiment

Examples

data(example_QCexperiment)
QCannotation(exampleExp)

shengqh/ChIPQC documentation built on Feb. 27, 2023, 10:51 p.m.