ribl-methods: Retrieve numbers of reads overlapping blacklisted regions

In shengqh/ChIPQC: Quality metrics for ChIPseq data

Retrieve numbers of reads overlapping blacklisted regions

Description

Retrieve the numbers of reads overlapping blacklisted regions.

Methods

signature(object = "ChIPQCexperiment")

Retrieve a vector of the numbers of reads overlapping blacklisted regions for each sample in an experiment.

signature(object = "list")

Retrieve a vector of the numbers of reads overlapping blacklisted regions for each sample in a list of ChIPQCsample objects.

signature(object = "ChIPQCsample")

Retrieve the number of reads overlapping blacklisted regions in a sample.

Author(s)

Thomas Carroll and Rory Stark

See Also

ChIPQC-package, ChIPQCexperiment, ChIPQCsample

Examples

data(example_QCexperiment)
ribl(exampleExp)
ribl(QCsample(exampleExp,1))

shengqh/ChIPQC documentation built on Feb. 27, 2023, 10:51 p.m.