fragmentlength-methods: Retrieve the estimated fragment length

In shengqh/ChIPQC: Quality metrics for ChIPseq data

Retrieve the estimated fragment length

Description

Retrieve the estimated fragment length.

Methods

signature(object = "ChIPQCexperiment")

Retrieve a vector of estimated fragments sizes, one for each sample in the experiment.

signature(object = "list")

Retrieve a vector of estimated fragments sizes, one for each sample in a list of ChIPQCsample objects.

signature(object = "ChIPQCsample", width)

Retrieve the estimated fragment length for a sample. If width is missing, the readlength derived from the bam file is used as the read length.

Author(s)

Thomas Carroll and Rory Stark

See Also

ChIPQC-package, ChIPQCexperiment, ChIPQCsample

Examples

data(example_QCexperiment)
fragmentlength(exampleExp)
fragmentlength(QCsample(exampleExp,1))

shengqh/ChIPQC documentation built on Feb. 27, 2023, 10:51 p.m.