peaks-methods: Retrieve peaks

In shengqh/ChIPQC: Quality metrics for ChIPseq data

Retrieve peaks

Description

Retrieve peaks.

Methods

signature(object = "ChIPQCexperiment")

Retrieve a GRangesList of the peaks associated with all the samples in an experiment.

signature(object = "list")

Retrieve a GRangesList of the peaks associated with all the samples in a list of ChIPQCsample objects.

signature(object = "ChIPQCsample")

Retrieve a GRanges object containing the peaks associated with a sample.

Author(s)

Thomas Carroll and Rory Stark

See Also

ChIPQC-package, ChIPQCexperiment, ChIPQCsample

Examples

data(example_QCexperiment)
expPeaks = peaks(exampleExp)
length(expPeaks)
peaks(QCsample(exampleExp,1))

shengqh/ChIPQC documentation built on Feb. 27, 2023, 10:51 p.m.