plotCC-methods: Generate Cross-Coverage plots

In shengqh/ChIPQC: Quality metrics for ChIPseq data

Generate Cross-Coverage plots

Description

Generate Cross-Coverage plots.

Methods

signature(object = "ChIPQCexperiment", method)

Generate cross-coverage plots for all the samples in an experiment.

signature(object = "list", method)

Generate cross-coverage plots for list of samples in an experiment.

signature(object = "ChIPQCsample", methods)

Generate cross-coverage plots for a sample. Supported methods include:

"Coverage" [default]	Coverage plot

Note

plotCC uses ggplot2 for plotting, and returns a ggplot2 plot dataframe.

Author(s)

Thomas Carroll and Rory Stark

See Also

ChIPQC-package, ChIPQCexperiment, ChIPQCsample

Examples

data(example_QCexperiment)
plotCC(exampleExp)
plotCC(exampleExp,excludedBox=TRUE)
plotCC(QCsample(exampleExp,1))
plotCC(QCsample(exampleExp)[1:4])

shengqh/ChIPQC documentation built on Feb. 27, 2023, 10:51 p.m.