Files in sigven/oncoEnrichR
Cancer-dedicated gene set interpretation
.Rbuildignore
.Rinstignore
.bumpversion.cfg
.github/CODE_OF_CONDUCT.md
.github/ISSUE_TEMPLATE/oncoenrichr-bug-report.md
.github/ISSUE_TEMPLATE/oncoenrichr-feature-request.md
.github/workflows/pkgdown.yaml
DESCRIPTION
LICENSE
NAMESPACE
R/cell_tissue.R
R/data.R
R/disease_drug.R
R/enrich.R
R/gene_fitness.R
R/ligand_receptor.R
R/onco_enrichr.R
R/ppi.R
R/prognostic.R
R/protein_complex.R
R/subcell.R
R/synthetic_lethality.R
R/sysdata.rda
R/tcga.R
R/tf_targets.R
R/unknown_function.R
R/utils.R
README.md
data/tissue_colors.rda
data_processing_code/README.md
data_processing_code/RELEASE_NOTES.txt
data_processing_code/data_raw.R
data_processing_code/data_utility_functions.R
docker/Dockerfile
docker/buildDocker.sh
docker/oncoenrichr_wrapper.xml
docker/renv.lock
inst/CITATION
inst/bibliography.bib
inst/extdata/logo.png
inst/extdata/myc_data.csv
inst/favicon-16x16.png
inst/templates/favicon-16x16.png
inst/templates/index_quarto.qmd
inst/templates/quarto/_aberration.qmd
inst/templates/quarto/_cancer_association.qmd
inst/templates/quarto/_cancer_hallmark_association.qmd
inst/templates/quarto/_cell_tissue.qmd
inst/templates/quarto/_coexpression.qmd
inst/templates/quarto/_documentation_workflow.qmd
inst/templates/quarto/_drug_target_association.qmd
inst/templates/quarto/_fitness_lof.qmd
inst/templates/quarto/_functional_enrichment.qmd
inst/templates/quarto/_functional_enrichment_invalid.qmd
inst/templates/quarto/_ligand_receptor.qmd
inst/templates/quarto/_ppi.qmd
inst/templates/quarto/_prognosis_survival.qmd
inst/templates/quarto/_project_background.qmd
inst/templates/quarto/_protein_complex.qmd
inst/templates/quarto/_protein_domain.qmd
inst/templates/quarto/_query_verification.qmd
inst/templates/quarto/_regulatory_interactions.qmd
inst/templates/quarto/_subcell_comp.qmd
inst/templates/quarto/_synthetic_lethality.qmd
inst/templates/quarto/_unknown_function.qmd
inst/templates/rmarkdown/_aberration.Rmd
inst/templates/rmarkdown/_cancer_association.Rmd
inst/templates/rmarkdown/_cancer_hallmark_association.Rmd
inst/templates/rmarkdown/_cell_tissue.Rmd
inst/templates/rmarkdown/_coexpression.Rmd
inst/templates/rmarkdown/_disclaimer.md
inst/templates/rmarkdown/_documentation_workflow.Rmd
inst/templates/rmarkdown/_drug_target_association.Rmd
inst/templates/rmarkdown/_fitness_lof.Rmd
inst/templates/rmarkdown/_functional_enrichment.Rmd
inst/templates/rmarkdown/_functional_enrichment_invalid.Rmd
inst/templates/rmarkdown/_header.html
inst/templates/rmarkdown/_ligand_receptor.Rmd
inst/templates/rmarkdown/_ppi.Rmd
inst/templates/rmarkdown/_prognosis_survival.Rmd
inst/templates/rmarkdown/_project_background.Rmd
inst/templates/rmarkdown/_protein_complex.Rmd
inst/templates/rmarkdown/_protein_domain.Rmd
inst/templates/rmarkdown/_query_verification.Rmd
inst/templates/rmarkdown/_regulatory_interactions.Rmd
inst/templates/rmarkdown/_site.yml
inst/templates/rmarkdown/_subcell_comp.Rmd
inst/templates/rmarkdown/_synthetic_lethality.Rmd
inst/templates/rmarkdown/_unknown_function.Rmd
inst/templates/rmarkdown/index.Rmd
man/cancer_association_rank.Rd
man/figures/can-cell.png
man/figures/elixir_norway.png
man/figures/logo.png
man/figures/oncoenrichr_overview.png
man/figures/oncoenrichr_slideshow.gif
man/init_report.Rd
man/load_db.Rd
man/onco_enrich.Rd
man/tidyeval.Rd
man/tissue_colors.Rd
man/validate_db.Rd
man/validate_db_df.Rd
man/write.Rd
oncoEnrichR.Rproj
pkgdown/.DS_Store
pkgdown/_pkgdown.yml
pkgdown/assets/.DS_Store
pkgdown/assets/img/can-cell.png
pkgdown/assets/img/elixir_norway.png
pkgdown/assets/img/oncoenrichr_overview.png
pkgdown/assets/img/oncoenrichr_overview2.png
pkgdown/assets/img/oncoenrichr_slideshow2.gif
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
pkgdown/index.md
renv.lock
tests/testthat.R
tests/testthat/test_complex.R
tests/testthat/test_disease_drug.R
tests/testthat/test_enrich.R
tests/testthat/test_fitness.R
tests/testthat/test_ligandreceptor.R
tests/testthat/test_oncoenrichr.R
tests/testthat/test_ppi.R
tests/testthat/test_prognostic_assocs.R
tests/testthat/test_subcell.R
tests/testthat/test_tcga.R
tests/testthat/test_tf_target.R
tests/testthat/test_utils.R
vignettes/CHANGELOG.Rmd
vignettes/annotation_resources.Rmd
vignettes/cancer_gene_rank.Rmd
vignettes/input.Rmd
vignettes/installation.Rmd
vignettes/module_screenshots/.DS_Store
vignettes/module_screenshots/aberration_I.jpg
vignettes/module_screenshots/aberration_II.jpg
vignettes/module_screenshots/aberration_III.jpg
vignettes/module_screenshots/aberration_IV.jpg
vignettes/module_screenshots/cancer_association_I.jpg
vignettes/module_screenshots/cancer_association_II.jpg
vignettes/module_screenshots/cancer_hallmarks.jpg
vignettes/module_screenshots/cell_tissue_I.jpg
vignettes/module_screenshots/cell_tissue_II.jpg
vignettes/module_screenshots/drug_I.jpg
vignettes/module_screenshots/drug_II.jpg
vignettes/module_screenshots/enrichment_I.jpg
vignettes/module_screenshots/enrichment_II.jpg
vignettes/module_screenshots/excel.jpg
vignettes/module_screenshots/fitness_I.jpg
vignettes/module_screenshots/fitness_II.jpg
vignettes/module_screenshots/oncoEnrichR_SuppFigure1.png
vignettes/module_screenshots/ppi_I.jpg
vignettes/module_screenshots/ppi_II.jpg
vignettes/module_screenshots/prognostic_I.jpg
vignettes/module_screenshots/prognostic_II.jpg
vignettes/module_screenshots/protein_complex.jpg
vignettes/module_screenshots/protein_domains.jpg
vignettes/module_screenshots/query_verification.jpg
vignettes/module_screenshots/regulatory_I.jpg
vignettes/module_screenshots/regulatory_II.jpg
vignettes/module_screenshots/subcell_I.jpg
vignettes/module_screenshots/subcell_II.jpg
vignettes/module_screenshots/synthetic_lethality.jpg
vignettes/module_screenshots/tumor_coexpression.jpg
vignettes/module_screenshots/unknown_function.jpg
vignettes/output.Rmd
vignettes/running.Rmd
