Files in simon-hans/CEDARS
Simple and Efficient Pipeline for Electronic Health Record Annotation
.Rbuildignore
.gitbook.yaml
.gitbook/assets/GitHub Schema 1 B new color.png
.gitbook/assets/GitHub Schema 2 A new color.png
.gitignore
CEDARS.Rproj
CNAME
CODE_OF_CONDUCT.md
DESCRIPTION
LICENSE
NAMESPACE
R/UMLS_processor.R
R/accessory_functions.R
R/data_io.R
R/database.R
R/dictionaries.R
R/negex.R
R/negex_data.R
R/search.R
R/simulated_patients_data.R
R/text_processing.R
R/zzz.R
README.md
_config.yml
assets/css/style.scss
data/negex.RData
data/simulated_patients.RData
docs/CEDARS.pdf
docs/CEDARS_admin_manual.md
docs/CEDARS_end_user_manual.md
docs/SUMMARY.md
docs/pics/GitHub Schema 1 C blue.ai
docs/pics/GitHub Schema 1 C blue.png
docs/pics/GitHub Schema 2 B blue & gold.png
docs/pics/GitHub Schema 2 C.ai
docs/pics/GitHub Schema 2 C.png
docs/pics/GitHub Schema 3 E.ai
docs/pics/GitHub Schema 3 E.png
docs/pics/GitHub Schema 4 B.ai
docs/pics/GitHub Schema 4 B.png
docs/pics/Thumbs.db
docs/pics/interface A.png
docs/pics/placeholder
inst/NOTICE/NOTICE
inst/shiny/app.R
man/add_end_user.Rd
man/aggregate_note.Rd
man/aggregate_paragraph.Rd
man/automatic_NLP_processor.Rd
man/batch_processor_db.Rd
man/batch_upload_notes.Rd
man/colorize.Rd
man/commit_patient.Rd
man/complete_case.Rd
man/create_project.Rd
man/db_download.Rd
man/db_upload.Rd
man/delete_end_user.Rd
man/document_processor.Rd
man/dot-onLoad.Rd
man/download_events.Rd
man/download_filtered_tags.Rd
man/end_users.Rd
man/fast_merge_umls.Rd
man/find_model.Rd
man/find_project_name.Rd
man/format_keywords.Rd
man/get_data.Rd
man/get_model.Rd
man/get_patient.Rd
man/get_wrapper.Rd
man/id_expander.Rd
man/initialize_annotations.Rd
man/initialize_notes.Rd
man/initialize_patients.Rd
man/initialize_users.Rd
man/lemma_match.Rd
man/lock_records.Rd
man/lock_records_admin.Rd
man/mark.Rd
man/mongo_connect.Rd
man/mongo_uri_standard.Rd
man/mrconso_upload.Rd
man/mrrel_upload.Rd
man/negation_tagger.Rd
man/negex.Rd
man/negex_processor.Rd
man/negex_token_tagger.Rd
man/negex_upload.Rd
man/parse_query.Rd
man/password_verification.Rd
man/paste_sections.Rd
man/patient_processor_par.Rd
man/patient_roster_update.Rd
man/populate_annotations.Rd
man/populate_dictionaries.Rd
man/populate_notes.Rd
man/populate_query.Rd
man/populate_users.Rd
man/post_data.Rd
man/post_wrapper.Rd
man/pre_search.Rd
man/sanitize.Rd
man/sanitize_query.Rd
man/save_credentials.Rd
man/save_query.Rd
man/save_tags.Rd
man/select_patient.Rd
man/sentence_eval.Rd
man/sentence_search.Rd
man/simulated_patients.Rd
man/standardize_nlp.Rd
man/start_local.Rd
man/tag_filter.Rd
man/terminate_project.Rd
man/terminate_project_new.Rd
man/token_splitter.Rd
man/umls_processor.Rd
man/unlock_records.Rd
man/unlock_records_admin.Rd
man/unlock_user.Rd
man/upload_comments.Rd
man/upload_events.Rd
man/upload_notes.Rd
