make_catalogue_strata_df: Group strata from different stratification axes

Description Usage Arguments Value See Also Examples

View source: R/compare_SMCs.R

Description

For a comparison of the strata from different orthogonal stratification axes, i.e. othogonal SMCs, the strata have to be grouped and reformatted. This function does this task for the comparison by cosine similarity of mutational catalogues. Output of this function is the basis for applying make_comparison_matrix. It is called by the wrapper function run_comparison_catalogues.

Usage

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make_catalogue_strata_df(
  in_stratification_lists_list,
  in_additional_stratum = NULL
)

Arguments

in_stratification_lists_list

List of lists with entries from different (orthogonal) stratification axes or SMCs

in_additional_stratum

Include an additionally supplied stratum in comparison in non-NULL.

Value

A list with entries strata_df, number_of_SMCs, number_of_strata.

See Also

plot_strata

make_comparison_matrix

run_comparison_catalogues

Examples

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slw287r/yapsa documentation built on June 7, 2020, 12:46 a.m.