plotExchangeSpectra: Plot the spectra of nucleotide exchanges

In slw287r/yapsa: Yet Another Package for Signature Analysis

Description

Plots the spectra of nucleotide exchanges in their triplet contexts. If several columns are present in the input data frame, the spectra are plotted for every column separately.

Usage

plotExchangeSpectra(
  in_catalogue_df,
  in_colour_vector = NULL,
  in_show_triplets = FALSE,
  in_show_axis_title = FALSE,
  in_scales = "free_x",
  in_refLine = NULL,
  in_refAlpha = 0.5,
  in_background = NULL
)

Arguments

in_catalogue_df	Numerical data frame encoding the exchange spectra to be displayed, either a mutational catalogue V or a signatures matrix W.
in_colour_vector	Specifies the colours of the 6 nucleotide exchanges if non-null.
in_show_triplets	Whether or not to show the triplets on the x-axis
in_show_axis_title	Whether or not to show the name of the y-axis
in_scales	Argument passed on to facet_grid
in_refLine	If non-null, value on the y-axis at which a horizontal line is to be drawn
in_refAlpha	Transparency of the horizontal line if it is to be drawn
in_background	Option to provide a background theme, e.g. theme_grey

Value

The generated barplot - a ggplot2 plot

See Also

geom_bar

facet_grid

Examples

 NULL

slw287r/yapsa documentation built on June 7, 2020, 12:46 a.m.