transform_rownames_R_to_MATLAB: Change rownames from one naming convention to another
In slw287r/yapsa: Yet Another Package for Signature Analysis

Description Usage Arguments Value Examples

Rownames or names of the features used differ between the different contexts a signature analysis is carried out in. The function transform_rownames_R_to_MATLAB changes from the convention used in the YAPSA pacakge to the one used by Alexandrov et al. in the MATLAB framework.

The function transform_rownames_MATLAB_to_R changes from the convention used in Alexandrov et al. in the MATLAB framework to the one used by the YAPSA pacakge.

The function transform_rownames_MATLAB_to_R changes from the convention used in stored mutational catalogues by Alexandrov et al. to the one used by the YAPSA pacakge.

The function transform_rownames_YAPSA_to_deconstructSigs changes from the convention used in the YAPSA package to the one used by the deconstructSigs package.

The function transform_rownames_YAPSA_to_deconstructSigs changes from the convention used in the deconstructSigs package to the one used by the YAPSA pacakge.

transform_rownames_R_to_MATLAB(in_rownames, wordLength = 3)

transform_rownames_MATLAB_to_R(in_rownames, wordLength = 3)

transform_rownames_nature_to_R(in_rownames, wordLength = 3)

transform_rownames_YAPSA_to_deconstructSigs(in_rownames, wordLength = 3)

transform_rownames_deconstructSigs_to_YAPSA(in_rownames, wordLength = 3)