Files in ste-depo/INSPEcT
Analysis of 4sU-seq and RNA-seq time-course data

DESCRIPTION
NAMESPACE
R/AllClasses.R R/AllGenerics.R R/AllInternalFunctions.R R/Extract-methods.R R/chisqtest-methods.R R/compareSteadyNoNascent-function.R R/dataDocumentation.R R/geneClass-methods.R R/getModel-methods.R R/inHeatmap-methods.R R/logLik-methods.R R/makeModelRates-methods.R R/makeSimDataset-methods.R R/makeSimModel-methods.R R/modelRates-methods.R R/modelingParams-methods.R R/newINSPEcT-functions.R R/plotGene-methods.R R/quantifyExpressionsFromBAMs.R R/quantifyExpressionsFromTrAbundance.R R/quantifyExpressionsFromTrCounts-functions.R R/ratePvals-methods.R R/ratesFirstGuess-methods.R R/rocCurve-methods.R R/rocThresholds-methods.R R/sfPlot-methods.R R/show-methods.R R/steady-state-methods.R R/testingParams-methods.R R/viewModelRates-methods.R
data/allcounts.RData
data/datalist
data/featureWidths.RData
data/libsizes.RData
data/matureInspObj_sim3.RData
data/matureInspObj_sim4.RData
data/nascentInspObj.RData
data/nascentInspObj10.RData
data/nascentInspObj_sim3.RData
data/nascentInspObj_sim4.RData
inst/CITATION
inst/NEWS
inst/extdata/bamRep1.bam
inst/extdata/bamRep2.bam
inst/extdata/bamRep3.bam
inst/extdata/bamRep4.bam
man/.Rhistory
man/AIC-INSPEcT-method.Rd man/Extract.Rd man/INSPEcT-class.Rd man/INSPEcT.Rd man/INSPEcT_diffsteady-class.Rd man/INSPEcT_model-class.Rd man/allcounts.Rd man/chisqmodel.Rd man/chisqtest.Rd man/combine.Rd man/compareSteady.Rd man/compareSteadyNoNascent.Rd man/dim-INSPEcT-method.Rd man/featureNames-INSPEcT-method.Rd man/geneClass.Rd man/getModel.Rd man/inHeatmap.Rd man/labeledSF.Rd man/logLik.Rd man/makeModelRates.Rd man/makeSimDataset.Rd man/makeSimModel.Rd man/modelRates.Rd man/modelingParams.Rd man/nGenes.Rd man/nTpts.Rd man/nascentInspObj.Rd man/nascentInspObj10.Rd man/newINSPEcT.Rd man/plotGene.Rd man/plotMA.Rd man/quantifyExpressionsFromBAMs.Rd man/quantifyExpressionsFromTrAbundance.Rd man/quantifyExpressionsFromTrCounts.Rd man/ratePvals.Rd man/ratesFirstGuess.Rd man/ratesFirstGuessVar.Rd man/removeModel.Rd man/rocCurve.Rd man/rocThresholds.Rd man/sfPlot.Rd man/split.Rd man/testingParams.Rd man/totalSF.Rd man/tpts.Rd man/viewModelRates.Rd
vignettes/.build.timestamp
vignettes/INSPEcT.Rnw
ste-depo/INSPEcT documentation built on July 30, 2018, 12:04 p.m.