INSPEcT_diffsteady-class: An S4 class to represent comparisons between two steady-state...

Description Usage Arguments Details Value Slots Examples

Description

INSPEcT_diffsteady is a class able to store the results of the comparisons between two steady states. An object of class INSPEcT_diffsteady is created with the method "compareSteady" applied on two "INSPEcT" objects (see compareSteady).

Usage

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synthesis(object)

processing(object)

degradation(object)

## S4 method for signature 'INSPEcT_diffsteady'
show(object)

## S4 method for signature 'INSPEcT_diffsteady'
synthesis(object)

## S4 method for signature 'INSPEcT_diffsteady'
processing(object)

## S4 method for signature 'INSPEcT_diffsteady'
degradation(object)

Arguments

object

An object of class INSPEcT_model

Details

Methods associated to the class INSPEcT_diffsteady are:

Value

Method show for objects of class INSPEcT_model returns the number of the genes that have been modeled

Slots

synthesis

A data.frame which contains both input data and comparisons results regarding synthesis rates

degradation

A data.frame which contains both input data and comparisons results regarding degradation rates

processing

A data.frame which contains both input data and comparisons results regarding processing rates

Examples

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data('nascentInspObj', package='INSPEcT')	
simRates<-makeSimModel(nascentInspObj, 1000, seed=1)
newTpts<-c(0, 16)
nascentInspObj_sim3<-makeSimDataset(object=simRates
                                   ,tpts=newTpts
                                   ,nRep=3
                                   ,NoNascent=FALSE
                                   ,seed=1)
newTpts<-c(0, 16)
nascentInspObj_sim4<-makeSimDataset(object=simRates
                                   ,tpts=newTpts
                                   ,nRep=4
                                   ,NoNascent=FALSE
                                   ,seed=2)

diffrates<-compareSteady(inspectIds1=nascentInspObj_sim3
                        ,inspectIds2=nascentInspObj_sim4
                        ,nRep1=3
                        ,nRep2=4)
head(synthesis(diffrates))
head(processing(diffrates))
head(degradation(diffrates))

ste-depo/INSPEcT documentation built on July 30, 2018, 12:04 p.m.