plotGene: Plot the pre-modeled and modeled profiles for one gene

Description Usage Arguments Value Examples

Description

Plot the pre-modeled and modeled profiles for one gene

A method to see the shapes of the estimated synthesis, degradation and processing rates, pre-RNA and total RNA concentrations (solid thin lines) their variances (dashed lines) and the modeled rates and concentrations (ticker solid line) of a single gene.

Usage

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plotGene(object, ix, fix.yaxis = FALSE, priors = TRUE)

## S4 method for signature 'INSPEcT'
plotGene(object, ix, fix.yaxis = FALSE, priors = TRUE)

Arguments

object

An object of class INSPEcT

ix

Eiher a rowname or a row number to select one single gene

fix.yaxis

A logical, indicating whether the limits for y-axis of degradation and processing rates should be fixed relative to their distributions

priors

A logical, if true the priors of the rates are plotted

Value

A list containing total RNA levels and their confidence interval (levels plus and minus one standard deviation), pre-RNA lelevs and their confidence intervals, synthsis rates and their confidence intervals, degradation rates and processing rates of the selected gene.

Examples

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nascentInspObj10 <- readRDS(system.file(package='INSPEcT', 'nascentInspObj10.rds'))
plotGene(nascentInspObj10, 1)

ste-depo/INSPEcT documentation built on Dec. 23, 2018, 5:32 a.m.