modelRatesNF: Launch the modeling process without imposing sigmoid/impulse...

In ste-depo/INSPEcT: Modeling RNA synthesis, processing and degradation with RNA-seq data

Description

This method compute confidence intervals for the rates of synthesis, degradation and processing estimated by newINSPEcT that will be used to estimate the variability of each rate in ratePvals method.

Usage

modelRatesNF(object, BPPARAM = SerialParam())

## S4 method for signature 'INSPEcT'
modelRatesNF(object, BPPARAM = SerialParam())

Arguments

object	An object of class INSPEcT
BPPARAM	Parallelization parameters for bplapply. By default SerialParam()

Value

An object of class INSPEcT with modeled rates

Examples

if( Sys.info()["sysname"] != "Windows" ) {
	nascentInspObj10 <- readRDS(system.file(package='INSPEcT', 'nascentInspObj10.rds'))
	## models removal
	nascentInspObjThreeGenes <- removeModel(nascentInspObj10[1:3])
	nascentInspObjThreeGenes <- modelRatesNF(nascentInspObjThreeGenes, 
	  BPPARAM=SerialParam())
	## view modeled synthesis rates
	viewModelRates(nascentInspObjThreeGenes, 'synthesis')
	## view gene classes
	geneClass(nascentInspObjThreeGenes)
}

ste-depo/INSPEcT documentation built on Oct. 3, 2020, 9:14 p.m.