PTreg: Calculate the post-transcriptional ratio from an object of...

In ste-depo/INSPEcT: Modeling RNA synthesis, processing and degradation with RNA-seq data

Description

Extract the post-transcriptional regulation matrix

Usage

PTreg(object)

## S4 method for signature 'INSPEcT_steadyNoNascent'
PTreg(object)

Arguments

object

An object of class INSPEcT_steadyNoNascent

Value

A matrix containing the post-transcriptional regulated genes. This matrix is generated by the method compareSteadyStateNoNascent. It generally report 1 for regulated genes in specific samples, 0 for non regulated genes and NA for genes that do not passed the expression threshold. In case the argument returnNormScores was set to TRUE, instead of discretes values, the deviations from the expected model normalized by the experimental standard deviation is reported.

ste-depo/INSPEcT documentation built on Oct. 3, 2020, 9:14 p.m.