Make3D4obj-methods: description of function Make3D4obj

In stela2502/StefansExpressionSet: StefansExpressionSet

description of function Make3D4obj

Description

This function created a MDS 3D plot with an inbuilt background describing the data colors

Usage

Make3D4obj(x, group, mds.type = "PCA", cex = 0.5, colFunc = function(x) { 
     rainbow(x) }, cut = F, names = F, opath = NULL, main = "")

Arguments

x	the StefansExpressionSet object
group	the grouping value (either colname from the samples table or a rowname from the data table
mds.type	the mds type to use (names from names(x@usedObj$MDS)) default = PCA
cex	define the size of the strings default=0.5
colFunc	the color function if the color is not already defined using colors_4() default= function(x)rainbow(x)
cut	this has to be true for genes, as the samples are then binned into 10 expression groups each containing the same number of samples default=F
names	if true not dots, but the name in the samples table is plotted in 3D default=F
opath	create a webgl representation of the plot in a html page in this path (default = NULL)
main	the title of the plot (default =”)

stela2502/StefansExpressionSet documentation built on April 24, 2023, 8:15 p.m.