coexprees4gene-methods: description of function coexprees4gene

Description Usage Arguments Value

Description

Calculate the coexpression for any given gene

Usage

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coexprees4gene(x, gene = NULL, method = "spearman",
  geneNameCol = "gene_name", padjMethod = "BH")

Arguments

x

the StefansExpressionSet varibale

method

any method supported by cor.test

geneNameCol

the name of the gene column (gene_name)

padjMethod

the method to calucate the FDR with p.adjust

Value

a data.frame with the columns 'GeneSymbol', 'pval', 'cor', 'adj.p'


stela2502/StefansExpressionSet documentation built on May 30, 2019, 2:38 p.m.