coexprees4gene-methods: description of function coexprees4gene
In stela2502/StefansExpressionSet: StefansExpressionSet
coexprees4gene R Documentation
description of function coexprees4gene
Description
Calculate the coexpression for any given gene
Usage
coexprees4gene(x, gene = NULL, method = "spearman",
geneNameCol = "gene_name", padjMethod = "BH")
Arguments
x
the StefansExpressionSet varibale
method
any method supported by cor.test
geneNameCol
the name of the gene column (gene_name)
padjMethod
the method to calucate the FDR with p.adjust
Value
a data.frame with the columns 'GeneSymbol', 'pval', 'cor', 'adj.p'
stela2502/StefansExpressionSet documentation built on April 24, 2023, 8:15 p.m.
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| coexprees4gene | R Documentation |
description of function coexprees4gene
Description
Calculate the coexpression for any given gene
Usage
coexprees4gene(x, gene = NULL, method = "spearman",
geneNameCol = "gene_name", padjMethod = "BH")
Arguments
x |
the StefansExpressionSet varibale |
method |
any method supported by cor.test |
geneNameCol |
the name of the gene column (gene_name) |
padjMethod |
the method to calucate the FDR with p.adjust |
Value
a data.frame with the columns 'GeneSymbol', 'pval', 'cor', 'adj.p'
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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