API for stela2502/StefansExpressionSet
StefansExpressionSet

Global functions
'bestGrouping,StefansExpressionSet-method Man page
'predict.rf,SingleCellsNGS-method Man page
'rfCluster_col,StefansExpressionSet-method Man page
'rfCluster_row,StefansExpressionSet-method Man page
FromCountsObj Man page
FromCountsObj,FromCountsObj-method Man page
Make3D4obj Man page
Make3D4obj,StefansExpressionSet-method Man page
NGSexpressionSet Man page Man page
NGSexpressionSet,NGSexpressionSet-method Man page
NGSexpressionSet-package Man page
PMID25158935exp Man page
PMID25158935samples Man page
SingleCellsNGS Man page Man page
SingleCellsNGS,SingleCellsNGS-method Man page
SingleCellsNGS-package Man page
StefansExpressionSet Man page Man page
StefansExpressionSet,data.frame-method Man page
add2usedObj Man page
add2usedObj,add2usedObj-method Man page
addAnnotation Man page
addAnnotation,StefansExpressionSet-method Man page
addCluster Man page
addCluster,Clusters-method Man page
addGeneColGroup Man page
addGeneColGroup,StefansExpressionSet-method Man page
addSampleColGroup Man page
addSampleColGroup,StefansExpressionSet-method Man page
add_to_stat Source code
anayse_working_set Man page
anayse_working_set,NGSexpressionSet-method Man page
as_BioData Man page
as_NGSexpressionSet Man page
bestGrouping Man page
check.depth Man page
check.depth,NGSexpressionSet-method Man page
clusters Man page
clusters,StefansExpressionSet-method Man page
coexprees4gene Man page
coexprees4gene,StefansExpressionSet-method Man page
collaps Man page
collaps,StefansExpressionSet-method Man page
colors_4 Man page
colors_4,StefansExpressionSet-method Man page
complexHeatmap Man page
complexHeatmap,StefansExpressionSet-method Man page
cor2cytoscape Man page
cor2cytoscape,StefansExpressionSet-method Man page
corMat Man page
corMat,StefansExpressionSet-method Man page
createRFgrouping_col Man page
createRFgrouping_col,StefansExpressionSet-method Man page
createRFgrouping_row Man page
createRFgrouping_row,StefansExpressionSet-method Man page
createStats Man page
createStats,NGSexpressionSet-method Man page
defineHeatmapColors Man page
defineHeatmapColors,SingleCellsNGS-method Man page
describe.probeset Man page
describe.probeset,StefansExpressionSet-method Man page
difference Man page
difference,Clusters-method Man page
drop.samples Man page
drop.samples,StefansExpressionSet-method Man page
export.data Man page
export.data,StefansExpressionSet-method Man page
export4GEDI Man page
export4GEDI,StefansExpressionSet-method Man page
force.numeric Man page
force.numeric,StefansExpressionSet-method Man page
forceAbsoluteUniqueSample Man page
forceAbsoluteUniqueSample,character-method Man page
getAnnotation4probesets Man page
getAnnotation4probesets,StefansExpressionSet-method Man page
getProbesetsFromStats Man page
getProbesetsFromStats,StefansExpressionSet-method Man page
getProbesetsFromValues Man page
getProbesetsFromValues,StefansExpressionSet-method Man page
get_gene_list Man page
get_gene_list,StefansExpressionSet-method Man page
gg.heatmap.list Man page
gg.heatmap.list,StefansExpressionSet-method Man page
ggplot.gene Man page
ggplot.gene,StefansExpressionSet-method Man page
group.hclust Man page
group.hclust,StefansExpressionSet-method Man page
groups.boxplot Man page
groups.boxplot,StefansExpressionSet-method Man page
heatmap.3 Source code
identifyBestGrouping Man page
identifyBestGrouping,SingleCellsNGS-method Man page
interesting_genes Man page
interesting_genes,SingleCellsNGS-method Man page
loadObj Man page
loadObj,StefansExpressionSet-method Man page
log2 Man page
log2,StefansExpressionSet-method Man page
mds Man page
mds,StefansExpressionSet-method Man page
melt Man page
melt,StefansExpressionSet-method Man page
minValueExpr Man page
minValueExpr,SingleCellsNGS-method Man page
name_4_IDs Man page
name_4_IDs,StefansExpressionSet-method Man page
normalize Man page Man page Man page Man page
normalize,NGSexpressionSet-method Man page
normalize,SingleCellsNGS-method Man page
normalize,StefansExpressionSet-method Man page Man page
pcorMat Man page
pcorMat,StefansExpressionSet-method Man page
plot.heatmaps Man page
plot.heatmaps,StefansExpressionSet-method Man page
plot.legend Man page
plot.legend,plot.legend-method Man page
plot.probeset Man page
plot.probeset,StefansExpressionSet-method Man page
plot.stats.as.heatmap Man page
plot.stats.as.heatmap,StefansExpressionSet-method Man page
plot_histogram Man page
plot_histogram,StefansExpressionSet-method Man page
predict.rf Man page
preprocess Man page
preprocess,NGSexpressionSet-method Man page
pwd Man page
qualityTest Man page
qualityTest,SingleCellsNGS-method Man page
quality_of_fit Man page
quality_of_fit,Clusters-method Man page
ranks Man page
ranks,StefansExpressionSet-method Man page
read.bams Man page
read.bams,NGSexpressionSet-method Man page
reads.taken Man page
reads.taken,NGSexpressionSet-method Man page
red Man page
reduce.Obj Man page
reduce.Obj,StefansExpressionSet-method Man page
removeBatch Man page
removeBatch,NGSexpressionSet-method Man page
reorder.genes Man page
reorder.genes,StefansExpressionSet-method Man page
reorder.samples Man page
reorder.samples,StefansExpressionSet-method Man page
restrictSamples Man page
restrictSamples,StefansExpressionSet-method Man page
rfCluster_col Man page
rfCluster_row Man page
run_ROTS Source code
saveObj Man page
saveObj,StefansExpressionSet-method Man page
sd.filter Man page
sd.filter,stat_sd.filter-method Man page
set.outpath Man page
set.outpath,StefansExpressionSet-method Man page
show Man page
show,StefansExpressionSet-method Man page
simpleAnova Man page Man page
simpleAnova,SingleCellsNGS-method Man page
simpleAnova,StefansExpressionSet-method Man page
transpose Man page
transpose,02_transpose-method Man page
update.measurements Man page
update.measurements,SingleCellsNGS-method Man page
write.data Man page
write.data,StefansExpressionSet-method Man page
writeStatTables Man page
writeStatTables,StefansExpressionSet-method Man page
z.score Man page
z.score,StefansExpressionSet-method Man page
stela2502/StefansExpressionSet documentation built on Sept. 18, 2017, 9:15 p.m.