plot_histogram-methods: description of function plot_histograms

In stela2502/StefansExpressionSet: StefansExpressionSet

description of function plot_histograms

Description

This function plots one gene as histogram to check whether there ar4e clear expression differences in different plates.

Usage

plot_histogram(dataObj, probesetID, cuts = vector("list", 1),
  subpath = "preprocess", colGroup = "ArrayID", nameCol = "gene_name",
  png = FALSE, breaks = 15)

Arguments

dataObj	the StefansExpressionSet object
probesetID	the probeset id of the gene to plot
cuts	the cuts are used for the 1D gene groups default=vector('list',1)
subpath	the subpath to plot to ( default = preprocess)
colGroup	the samples table column to color the plot
nameCol	the gene name column to enhance the plot information
png	create a png file (default =F)
breaks	the amount of breaks in the hist default=15

stela2502/StefansExpressionSet documentation built on April 24, 2023, 8:15 p.m.