plot_histogram-methods: description of function plot_histograms

Description Usage Arguments

Description

This function plots one gene as histogram to check whether there ar4e clear expression differences in different plates.

Usage

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plot_histogram(dataObj, probesetID, cuts = vector("list", 1),
  subpath = "preprocess", colGroup = "ArrayID", nameCol = "gene_name",
  png = FALSE, breaks = 15)

Arguments

dataObj

the StefansExpressionSet object

probesetID

the probeset id of the gene to plot

cuts

the cuts are used for the 1D gene groups default=vector('list',1)

subpath

the subpath to plot to ( default = preprocess)

colGroup

the samples table column to color the plot

nameCol

the gene name column to enhance the plot information

png

create a png file (default =F)

breaks

the amount of breaks in the hist default=15


stela2502/StefansExpressionSet documentation built on May 30, 2019, 2:38 p.m.