complexHeatmap | R Documentation |
plot the PCR heatmap using the heatmap.3 function included in this package
complexHeatmap(x, ofile = NULL, colGroups = NULL, rowGroups = NULL,
colColors = NULL, rowColors = NULL, pdf = FALSE, subpath = "",
main = "", heapmapCols = function(x) { c("darkgrey", bluered(x)) },
brks = 10, X11type = "cairo")
x |
the StefansExpressionSet object |
ofile |
the outfile to create in the x@outpath folder |
colGroups |
columns in the samples table to use to order the data (first == order) |
rowGroups |
rows in the annotation table to use to color the heatmap rows (first == order) |
colColors |
a named list of column color vectors |
rowColors |
a named list of row color vectors |
pdf |
export as pdf (default = FALSE) |
subpath |
the subpath for the plots (default = ”) |
heapmapCols |
the color function to calculate the heatmap colours ( default function (x) c("darkgrey",bluered(x)) ) |
brks |
how many breaks should the expression value color key have (default=10) |
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