Man pages for stela2502/StefansExpressionSet
StefansExpressionSet

add2usedObj-methodsdescription of function add2usedObj
addAnnotation-methodsdescription of function addAnnotation
addCluster-methodsdescription of function addCluster
addGeneColGroup-methodsdescription of function addGeneColGroup
addSampleColGroup-methodsdescription of function addSampleColGroup
anayse_working_set-methodsdescription of function anayse_working_set
as_BioData-methodsdescription of function as
as_NGSexpressionSet-methodsdescription of function as_NGSexpressionSet
bestGroupingdescription of function randomForest
check.depth-methodsdescription of function check
clusters-methodsdescription of function clusters
coexprees4gene-methodsdescription of function coexprees4gene
collaps-methodsdescription of function collaps
colors_4-methodsdescription of function createRFgrouping_col
complexHeatmap-methodsdescription of function plot.beans
cor2cytoscape-methodsdescription of function cor2cytoscape
corMat-methodsdescription of function corMat
createRFgrouping_col-methodsdescription of function createRFgrouping_col
createRFgrouping_row-methodsdescription of function createRFgrouping_row
createStats-methodsdescription of function createStats
defineHeatmapColors-methodsdescription of function gg.heatmap.list
describe.probeset-methodsdescription of function describe.probeset
difference-methodsdescription of function difference
drop.samples-methodsdescription of function drop.samples
export4GEDI-methodsdescription of function export4GEDI
export.data-methodsdescription of function write.data
forceAbsoluteUniqueSample-methodsdescription of function forceAbsoluteUniqueSample
force.numeric-methodsdescription of function force.numeric
FromCountsObj-methodsdescription of function FromCountsObj
getAnnotation4probesets-methodsdescription of function getAnnotation4probesets
get_gene_list-methodsdescription of function get_gene_list
getProbesetsFromStats-methodsdescription of function getProbesetsFromStats
getProbesetsFromValues-methodsdescription of function getProbesetsFromValues
gg.heatmap.list-methodsdescription of function gg.heatmap.list
ggplot.gene-methodsdescription of function ggplot.gene
group.hclust-methodsdescription of function group.hclust
groups.boxplot-methodsdescription of function groups.boxplot
identifyBestGrouping-methodsdescription of function identifyBestGrouping
interesting_genes-methodsdescription of function interesting_genes
loadObj-methodsdescription of function loadObj
log2-methodsdescription of function log2
Make3D4obj-methodsdescription of function Make3D4obj
mds-methodsdescription of function mds.and.clus
melt-methodsdescription of function melt
minValueExpr-methodsdescription of function gg.heatmap.list
name_4_IDs-methodsdescription of function name_4_IDs
NGSexpressionSetNGSexpressionSet
NGSexpressionSet-methodsdescription of function NGSexpressionSet
normalize-methodsdescription of function normalize
pcorMat-methodsdescription of function corMat.Pvalues
plot.heatmaps-methodsdescription of function plot.heatmaps
plot_histogram-methodsdescription of function plot_histograms
plot.legend-methodsdescription of function plot.legend
plot-methodsdescription of function plot
plot.probeset-methodsdescription of function plot.probeset
PMID25158935expRead counts for the expression data described in PMID25158935
PMID25158935samplesRead counts for the sample data for the expression...
predict.rfdescription of function predict.rf
preprocess-methodsdescription of function preprocess
pwd-methodsdescription of function pwd
quality_of_fit-methodsdescription of function quality_of_fit
qualityTest-methodsdescription of function qualityTest
ranks-methodsdescription of function ranks
read.bams-methodsdescription of function read.bams
reads.taken-methodsdescription of function reads.taken
redreduced PMID25158935 dataset to a 100x15 StefansExpressionSet
reduce.Obj-methodsdescription of function reduce.Obj
removeBatch-methodsdescription of function removeBatch
reorder.genes-methodsdescription of function remove.genes
reorder.samples-methodsdescription of function remove.genes
restrictSamples-methodsdescription of function restrictSamples
rfCluster_colrfCluster_col
rfCluster_rowrfCluster_row
saveObj-methodsdescription of function saveObj
sd.filter-methodsdescription of function sd.filter
set.outpath-methodsdescription of function set.outpath
show-methodsdescription of function show
simpleAnova-methodsdescription of function simpleAnova
SingleCellsNGSSingleCellsNGS
SingleCellsNGS-methodsdescription of function SingleCellsNGS
StefansExpressionSetStefansExpressionSet
StefansExpressionSet-methodsdescription of function StefansExpressionSet
transpose-methodsdescription of function t
update.measurements-methodsdescription of function update.measurements
write.data-methodsdescription of function write.data
writeStatTables-methodsdescription of function writeStatTables
z.score-methodsdescription of function z.score
stela2502/StefansExpressionSet documentation built on Sept. 18, 2017, 9:15 p.m.