groups.boxplot | R Documentation |
This function can be used to get an overview of the different gene level groups in
an StefansExpressionSet It uses the linux montage command to merge all different boxplots
into one figure
groups.boxplot(x, groupCol = "GroupName", clusters, svg = F,
fname = "group_", width = 800, height = 800, mar = NULL,
Collapse = NULL, ...)
x |
the ExpresionSet object |
groupCol |
the column in the samples table that contains the sample grouping information |
svg |
create the single boxplots as svg or (default png) files |
fname |
the filename extension files are created by paste(x@outpath,fname,<GroupID>,"_boxplot") |
Collapse |
if set will lead to a collapse of the sample groups into one value per gene. Supports all |
groupRow |
the column in the annotation table hat contains the gene grouping information |
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