check.depth-methods: description of function check
In stela2502/StefansExpressionSet: StefansExpressionSet
check.depth R Documentation
description of function check
Description
this function checks how many reads are taken from the total dataset using the top 5 percent of genes only
Usage
check.depth(x, genes = NULL, cutoff = 0.77)
Arguments
x
the NGSexpressionSet
cutoff
a cutoff that defines how many reads may be taken from the top 5 percent genes before a sample gets rejected
gene
an optional list of genes you want to select for
Value
a vector of sample names that did not pass the check
stela2502/StefansExpressionSet documentation built on April 24, 2023, 8:15 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| check.depth | R Documentation |
description of function check
Description
this function checks how many reads are taken from the total dataset using the top 5 percent of genes only
Usage
check.depth(x, genes = NULL, cutoff = 0.77)
Arguments
x |
the NGSexpressionSet |
cutoff |
a cutoff that defines how many reads may be taken from the top 5 percent genes before a sample gets rejected |
gene |
an optional list of genes you want to select for |
Value
a vector of sample names that did not pass the check
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.