reads.taken-methods: description of function reads.taken

In stela2502/StefansExpressionSet: StefansExpressionSet

description of function reads.taken

Description

this check is testing how many percent of the total reads are taken from the first

x percent of the genes this function calls reads.taken.NGSexpressionSet internally.

Usage

reads.taken(x, percentile = 0.05, tf = NULL)

Arguments

x	the NGSexpressionSet
tf	if you supply a list of genes here the same values as for all genes are calulated for this list
genes	see reads.taken
cutoff	= 0.77 a good expression dataset should not use more than 77% of the reads in the top 5%

Value

a list of samples which have passed the test

a complicated list with al measured values

stela2502/StefansExpressionSet documentation built on April 24, 2023, 8:15 p.m.