plot-methods: description of function plot

In stela2502/StefansExpressionSet: StefansExpressionSet

description of function plot

Description

create heatmap for each statistics table and each pvalue cutoff This function uses

internally the plot.heatmaps() function for each selected probeset list

Usage

plot.stats.as.heatmap(x, pvalue = c(0.1, 0.01, 0.001, 1e-04, 1e-05, 1e-06,
  1e-07, 1e-08), Subset = NULL, Subset.name = NULL, comp = NULL,
  gene_centered = F, collaps = NULL, geneNameCol = "mgi_symbol")

Arguments

x	the StefansExpressionSet
pvalue	a vector of pvalues to set as cut off
Subset	no idear at the moment....
Subset.name	no idear what that should do here....
comp	a list of comparisons to restric the plotting to (NULL = all)
gene_centered	collapse all genes with the same gene symbol into one value
collaps	how to collapse the data if gene_centered
geneNameCol	the name of the gene.symbol column in the annotation

stela2502/StefansExpressionSet documentation built on April 24, 2023, 8:15 p.m.