chipseq-cbp: ChIP-seq, CBP dataset results
In stephaniehicks/benchmarkfdrData2019: Data and Benchmarking Results from Korthauer and Kimes et al. (2019)
Description
Arguments
Details
See Also
Examples
Description
Results for case study on differential peak calling in CREB-binding protein (CBP)
knockout and wild-type mice described in Korthauer and Kimes et al. (2019).
Analyses were performed using the csaw package.
Arguments
metadata
logical whether to load metadata (TRUE) or full resource (FALSE).
(default = FALSE)
Details
Results for this case study include:
-
cbp-csaw-benchmark: using csaw with region width as covariate.
-
cbp-csaw-uninf-benchmark: using csaw with uninformative covariate.
-
cbp-csaw-cov-benchmark: using csaw with mean coverage as covariate.
See Also
Examples
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`cbp-csaw-benchmark`(metadata = TRUE)
## Not run:
`cbp-csaw-benchmark`()
`cbp-csaw-uninf-benchmark`()
`cbp-csaw-cov-benchmark`()
## End(Not run)
stephaniehicks/benchmarkfdrData2019 documentation built on June 20, 2021, 10 a.m.
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Description Arguments Details See Also Examples
Description
Results for case study on differential peak calling in CREB-binding protein (CBP)
knockout and wild-type mice described in Korthauer and Kimes et al. (2019).
Analyses were performed using the csaw package.
Arguments
metadata |
logical whether to load metadata (TRUE) or full resource (FALSE). (default = FALSE) |
Details
Results for this case study include:
-
cbp-csaw-benchmark: using csaw with region width as covariate. -
cbp-csaw-uninf-benchmark: using csaw with uninformative covariate. -
cbp-csaw-cov-benchmark: using csaw with mean coverage as covariate.
See Also
Examples
1 2 3 4 5 6 7 8 | `cbp-csaw-benchmark`(metadata = TRUE)
## Not run:
`cbp-csaw-benchmark`()
`cbp-csaw-uninf-benchmark`()
`cbp-csaw-cov-benchmark`()
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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