Description Arguments Details See Also Examples
Results for case study on 16S microbiome Spearman correlation testing of ENIGMA dataset described in Korthauer and Kimes et al. (2019). Spearman correlation test was used to test for correlation between OTU-level microbial abundances and various geochemical and physical measurements.
metadata |
logical whether to load metadata (TRUE) or full resource (FALSE). (default = FALSE) |
Results for this case study include:
enigma-al-otus-benchmark
: testing for correlation with Al measurements using ubiquity as covariate.
enigma-al-otus-abun-benchmark
: testing for correlation with Al measurements using mean abundance as covariate.
enigma-al-otus-uninf-benchmark
: testing for correlation with Al measurements using uninformative covariate.
enigma-ph-otus-benchmark
: testing for correlation with pH measurements using ubiquity as covariate.
enigma-ph-otus-abun-benchmark
: testing for correlation with pH measurements using mean abundance as covariate.
enigma-ph-otus-uninf-benchmark
: testing for correlation with pH measurements using uninformative covariate.
enigma-so4-otus-benchmark
: testing for correlation with SO4 measurements using ubiquity as covariate.
enigma-so4-otus-abun-benchmark
: testing for correlation with SO4 measurements using mean abundance as covariate.
enigma-so4-otus-uninf-benchmark
: testing for correlation with SO4 measurements using uninformative covariate.
microbiome-schubert
, microbiome-baxter
, microbiome-goodrich
, microbiome-papa
1 2 3 4 5 6 7 8 9 10 11 12 13 14 | `enigma-al-otus-benchmark`(metadata = TRUE)
## Not run:
`enigma-al-otus-benchmark`()
`enigma-al-otus-abun-benchmark`()
`enigma-al-otus-uninf-benchmark`()
`enigma-ph-otus-benchmark`()
`enigma-ph-otus-abun-benchmark`()
`enigma-ph-otus-uninf-benchmark`()
`enigma-so4-otus-benchmark`()
`enigma-so4-otus-abun-benchmark`()
`enigma-so4-otus-uninf-benchmark`()
## End(Not run)
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