microbiome-enigma: Microbiome, ENIGMA dataset results

Description Arguments Details See Also Examples

Description

Results for case study on 16S microbiome Spearman correlation testing of ENIGMA dataset described in Korthauer and Kimes et al. (2019). Spearman correlation test was used to test for correlation between OTU-level microbial abundances and various geochemical and physical measurements.

Arguments

metadata

logical whether to load metadata (TRUE) or full resource (FALSE). (default = FALSE)

Details

Results for this case study include:

See Also

microbiome-schubert, microbiome-baxter, microbiome-goodrich, microbiome-papa

Examples

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`enigma-al-otus-benchmark`(metadata = TRUE)

## Not run: 
`enigma-al-otus-benchmark`()
`enigma-al-otus-abun-benchmark`()
`enigma-al-otus-uninf-benchmark`()
`enigma-ph-otus-benchmark`()
`enigma-ph-otus-abun-benchmark`()
`enigma-ph-otus-uninf-benchmark`()
`enigma-so4-otus-benchmark`()
`enigma-so4-otus-abun-benchmark`()
`enigma-so4-otus-uninf-benchmark`()

## End(Not run)

stephaniehicks/benchmarkfdrData2019 documentation built on June 20, 2021, 10 a.m.