yeast-insilico: Yeast in silico dataset results

Description Arguments Details References See Also Examples

Description

Results for differential gene expression analysis using in silico (computationally) spiked-in data generated from yeast data obtained from Schurch et al. (2016) as described in Korthauer and Kimes et al. (2019). Differential expression was tested using DESeq2.

Arguments

metadata

logical whether to load metadata (TRUE) or full resource (FALSE). (default = FALSE)

Details

Results for this case study include:

References

See Also

polyester-insilico

Examples

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`yeast-results-de5`(metadata = TRUE)

## Not run: 
`yeast-results-de5`()
`yeast-results-de5-uninfCov`()
`yeast-results-de10`()
`yeast-results-de10-uninfCov`()
`yeast-results-null5`()
`yeast-results-null10`()
`yeastH-results-de5`()
`yeastH-results-de5-uninfCov`()
`yeastH-results-de10`()
`yeastH-results-de10-uninfCov`()
`yeastHW-results-de5`()
`yeastHW-results-de10`()
`yeastII-results-de5`()
`yeastII-results-de5-uninfCov`()
`yeastII-results-de10`()
`yeastII-results-de10-uninfCov`()
`yeastIIH-results-de5`()
`yeastIIH-results-de5-uninfCov`()
`yeastIIH-results-de10`()
`yeastIIH-results-de10-uninfCov`()
`yeastIIHW-results-de5`()
`yeastIIHW-results-de10`()
`yeastIIW-results-de5`()
`yeastIIW-results-de10`()
`yeastW-results-de5`()
`yeastW-results-de10`()

## End(Not run)

stephaniehicks/benchmarkfdrData2019 documentation built on June 20, 2021, 10 a.m.