chipseq-h3k4me3: ChIP-seq, H3K4me3 dataset results

Description Arguments Details See Also Examples

Description

Results for case study on differential peak calling in human H3K4me3 ChIP-seq data from ENCODE described in Korthauer and Kimes et al. (2019). Analyses were performed using either DESeq2 applied to predefined regions or with the csaw package.

Arguments

metadata

logical whether to load metadata (TRUE) or full resource (FALSE). (default = FALSE)

Details

Results for this case study include:

See Also

chipseq-cbp

Examples

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`h3k4me3-promoters-benchmark`(metadata = TRUE)

## Not run: 
`h3k4me3-promoters-benchmark`()
`h3k4me3-csaw-benchmark`()
`h3k4me3-csaw-uninf-benchmark`()
`h3k4me3-csaw-cov-benchmark`()

## End(Not run)

stephaniehicks/benchmarkfdrData2019 documentation built on June 20, 2021, 10 a.m.