microbiome-baxter: Microbiome, Baxter dataset results

Description Arguments Details References See Also Examples

Description

Results for case study on 16S microbiome differential testing of Baxter et al. (2016) dataset described in Korthauer and Kimes et al. (2019). Wilcoxon rank-sum test was used to test for differential abundance between samples from patients with colorectal cancer and patients with no colonic lesions.

Arguments

metadata

logical whether to load metadata (TRUE) or full resource (FALSE). (default = FALSE)

Details

Results for this case study include:

References

See Also

microbiome-schubert, microbiome-goodrich, microbiome-papa, microbiome-enigma

Examples

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`baxter-genus-benchmark`(metadata = TRUE)

## Not run: 
`baxter-genus-benchmark`()
`baxter-genus-log-ubiquity-benchmark`()
`baxter-genus-mean-abun-benchmark`()
`baxter-genus-mean-uninf-benchmark`()
`baxter-otus-benchmark`()
`baxter-otus-log-ubiquity-benchmark`()

## End(Not run)

stephaniehicks/benchmarkfdrData2019 documentation built on June 20, 2021, 10 a.m.