Files in stephaniehicks/benchmarkfdrData2019
Data and Benchmarking Results from Korthauer and Kimes et al. (2019)
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/docs-casestudies.R
R/docs-simulations.R
R/zzz.R
README.md
inst/CITATION
inst/NEWS
inst/extdata/metadata-casestudies.csv
inst/extdata/metadata-sims.csv
inst/extdata/metadata.csv
inst/scripts/make-data/ChIP-seq/ChIPseq-CBP-csaw.Rmd
inst/scripts/make-data/ChIP-seq/ChIPseq-h3k4me3-csaw.Rmd
inst/scripts/make-data/ChIP-seq/ChIPseq-h3k4me3-promoters.Rmd
inst/scripts/make-data/GSA/fgsea-human.Rmd
inst/scripts/make-data/GSA/fgsea-mouse.Rmd
inst/scripts/make-data/Microbiome/microbiome-baxter.Rmd
inst/scripts/make-data/Microbiome/microbiome-enigma.Rmd
inst/scripts/make-data/Microbiome/microbiome-goodrich.Rmd
inst/scripts/make-data/Microbiome/microbiome-papa.Rmd
inst/scripts/make-data/Microbiome/microbiome-schubert.Rmd
inst/scripts/make-data/PolyesterInSilico/polyester-simulation.Rmd
inst/scripts/make-data/R/colorPalette.R
inst/scripts/make-data/R/common-BenchDesign.R
inst/scripts/make-data/R/effectSizePlot.R
inst/scripts/make-data/R/helpers-microbiome.R
inst/scripts/make-data/R/helpers-simulations.R
inst/scripts/make-data/R/plotCovariateBoxplots.R
inst/scripts/make-data/R/plotFDRMethodsOverlap.R
inst/scripts/make-data/R/plotMethodRank.R
inst/scripts/make-data/R/plotsim_aggupset.R
inst/scripts/make-data/R/plotsim_average.R
inst/scripts/make-data/R/plotsim_single.R
inst/scripts/make-data/R/plotsim_standardize.R
inst/scripts/make-data/R/rank_scatter.R
inst/scripts/make-data/R/rejections_scatter.R
inst/scripts/make-data/R/rejections_scatter_bins.R
inst/scripts/make-data/R/strat_hist.R
inst/scripts/make-data/RNA-seq/RNAseq-gtex.Rmd
inst/scripts/make-data/RNA-seq/RNAseq-mir200c.Rmd
inst/scripts/make-data/Simulations/simulations-informative-cosine.Rmd
inst/scripts/make-data/Simulations/simulations-informative-cubic.Rmd
inst/scripts/make-data/Simulations/simulations-informative-sine.Rmd
inst/scripts/make-data/Simulations/simulations-informative-step.Rmd
inst/scripts/make-data/Simulations/simulations-null.Rmd
inst/scripts/make-data/Simulations/simulations-uasettings-nonnull25.Rmd
inst/scripts/make-data/Simulations/simulations-uasettings-t.Rmd
inst/scripts/make-data/Simulations/simulations-uasettings.Rmd
inst/scripts/make-data/Simulations/simulations-varyinginformativeness-discrete.Rmd
inst/scripts/make-data/Simulations/simulations-varyinginformativeness-smooth.Rmd
inst/scripts/make-data/Simulations/simulations-varyingntests.Rmd
inst/scripts/make-data/Simulations/simulations-varyingpi0-t.Rmd
inst/scripts/make-data/Simulations/simulations-varyingpi0.Rmd
inst/scripts/make-data/YeastInSilico/yeast-simulation-bimodalalternative-highpi0.Rmd
inst/scripts/make-data/YeastInSilico/yeast-simulation-bimodalalternative.Rmd
inst/scripts/make-data/YeastInSilico/yeast-simulation-highpi0.Rmd
inst/scripts/make-data/YeastInSilico/yeast-simulation.Rmd
inst/scripts/make-data/scRNA-seq/scrnaseq-human-mast.Rmd
inst/scripts/make-data/scRNA-seq/scrnaseq-human-scdd.Rmd
inst/scripts/make-data/scRNA-seq/scrnaseq-human-wilcox.Rmd
inst/scripts/make-data/scRNA-seq/scrnaseq-mouse-mast.Rmd
inst/scripts/make-data/scRNA-seq/scrnaseq-mouse-scdd.Rmd
inst/scripts/make-data/scRNA-seq/scrnaseq-mouse-wilcox.Rmd
inst/scripts/make-metadata-casestudies.R
inst/scripts/make-metadata-sims.R
inst/scripts/make-metadata.R
man/chipseq-cbp.Rd
man/chipseq-h3k4me3.Rd
man/gsa-human.Rd
man/gsa-mouse.Rd
man/gwas-bmi.Rd
man/microbiome-baxter.Rd
man/microbiome-enigma.Rd
man/microbiome-goodrich.Rd
man/microbiome-papa.Rd
man/microbiome-schubert.Rd
man/polyester-insilico.Rd
man/rnaseq-brain.Rd
man/rnaseq-mir200c.Rd
man/scrnaseq-human.Rd
man/scrnaseq-mouse.Rd
man/sims-informative-cosine.Rd
man/sims-informative-cubic.Rd
man/sims-informative-sine.Rd
man/sims-informative-step.Rd
man/sims-null.Rd
man/sims-uasettings-25.Rd
man/sims-uasettings-t.Rd
man/sims-uasettings.Rd
man/sims-varyinginfo-discrete.Rd
man/sims-varyinginfo-smooth.Rd
man/sims-varyingntests.Rd
man/sims-varyingpi0-t.Rd
man/sims-varyingpi0.Rd
man/yeast-insilico.Rd
vignettes/benchmarkfdrData2019.Rmd
