Man pages for stephaniehicks/methylCC
Estimate the cell composition of whole blood in DNA methylation samples
| cell_counts | Generic function that returns the cell composition estimates |
| dot-extract_raw_data | Extract raw data |
| dot-find_dmrs | Finding differentially methylated regions |
| dot-initializeMLEs | .initializeMLEs |
| dot-initialize_theta | .initialize_theta |
| dot-methylcc_engine | .methylcc_engine |
| dot-methylcc_estep | Expectation step |
| dot-methylcc_mstep | Maximization step |
| dot-pick_target_positions | Pick target positions |
| dot-preprocess_estimatecc | .preprocess_estimatecc |
| dot-splitit | .splitit |
| dot-WFun | Helper function to take the product of Z and cell composition... |
| estimatecc | Estimate cell composition from DNAm data |
| estimatecc-class | the estimatecc class |
| FlowSorted.Blood.450k.sub | A reduced size of the FlowSorted.Blood.450k dataset |
| offMethRegions | Unmethylated regions for all celltypes |
| onMethRegions | Methylated regions for all celltypes |
