dot-pick_target_positions: Pick target positions

In stephaniehicks/methylCC: Estimate the cell composition of whole blood in DNA methylation samples

Pick target positions

Description

Pick probes from target data using the indices in dmp_regions

Usage

.pick_target_positions(target_granges, target_object = NULL,
  target_cvg = NULL, dmp_regions)

Arguments

target_granges	add more here.
target_object	an optional argument which contains the meta-data for target_granges. If target_granges already contains the meta-data, do not need to supply target_object.
target_cvg	coverage reads for the target object
dmp_regions	differentially methylated regions

Value

A list of GRanges objects to be used in .preprocess_estimatecc()

stephaniehicks/methylCC documentation built on Nov. 6, 2022, 5:51 p.m.