cell_counts: Generic function that returns the cell composition estimates

In stephaniehicks/methylCC: Estimate the cell composition of whole blood in DNA methylation samples

Generic function that returns the cell composition estimates

Description

Given a estimatecc object, this function returns the cell composition estimates

Accessors for the 'cell_counts' slot of a estimatecc object.

Usage

cell_counts(object)

## S4 method for signature 'estimatecc'
cell_counts(object)

Arguments

object

an object of class estimatecc.

Value

Returns the cell composition estimates

Examples

# This is a reduced version of the FlowSorted.Blood.450k 
# dataset available by using BiocManager::install("FlowSorted.Blood.450k),
# but for purposes of the example, we use the smaller version 
# and we set \code{demo=TRUE}. For any case outside of this example for 
# the package, you should set \code{demo=FALSE} (the default). 

dir <- system.file("data", package="methylCC")
files <- file.path(dir, "FlowSorted.Blood.450k.sub.RData") 
if(file.exists(files)){
    load(file = files)

    set.seed(12345)
    est <- estimatecc(object = FlowSorted.Blood.450k.sub, demo = TRUE) 
    cell_counts(est)
 }   

stephaniehicks/methylCC documentation built on Nov. 6, 2022, 5:51 p.m.