dot-methylcc_engine: .methylcc_engine

In stephaniehicks/methylCC: Estimate the cell composition of whole blood in DNA methylation samples

.methylcc_engine

Description

Helper function for estimatecc

Usage

.methylcc_engine(Ys, Zs, current_pi_mle, current_theta, epsilon, max_iter)

Arguments

Ys	observed methylation levels in samples provided by user of dimension R x n
Zs	Cell type specific regions of dimension R x K
current_pi_mle	cell composition MLE estimates of dimension K x n
current_theta	other parameter estimates in EM algorithm
epsilon	Add here.
max_iter	Add here.

Value

A list of MLE estimates that is used in estimatecc().

stephaniehicks/methylCC documentation built on Nov. 6, 2022, 5:51 p.m.