docker/README.md

In stianlagstad/chimeraviz: Visualization tools for gene fusions

This file contains simple instructions for how you can develop chimeraviz, either the current release verion of the development version, using the RStudio Docker images.

If these instructions don't work for you, please don't hesitate to open an issue and I'll assist you.

Release version

1. Build the Docker image with docker build . -f Dockerfile.release -t chimeraviz_release (this may take several minutes)
2. Start a container with docker run -it -e PASSWORD=42 -p 8787:8787 -v /path/to/chimeraviz/:/chimeraviz chimeraviz_release. Remember to change /path/to/chimeraviz/ to where you cloned the chimeraviz repository.
3. Go to localhost:8787, login with rstudio/42, run setwd("/chimeraviz"), then devtools::load_all(), and start coding

Development version

1. Build the Docker image with docker build . -f Dockerfile.devel -t chimeraviz_devel (this may take several minutes)
2. Start a container with docker run -it -e PASSWORD=42 -p 8787:8787 -v /path/to/chimeraviz/:/chimeraviz chimeraviz_devel. Remember to change /path/to/chimeraviz/ to where you cloned the chimeraviz repository.
3. Go to localhost:8787, login with rstudio/42, run setwd("/chimeraviz"), then devtools::load_all(), and start coding

stianlagstad/chimeraviz documentation built on Dec. 3, 2023, 8:11 p.m.