stiv1n/CYCLeR: CircRNA transcriptome assembly tool
CYCLeR is a software package for assembly of circRNA transcripts from RNA-seq data. Takes a set of BSJ prediction files and RNA-seq BAM files as an input and outputs circRNA trascnripts as FASTA, GTF and flat annotation files. The tools also outputs a padded FASTA to serve as an index for transcript EM abundance estimation.
Getting started
Browse package contents
Package details |
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| Author | Stefan Stefanov [cre, aut] |
| Bioconductor views | RNASeq Transcription TranscriptomeAssembly |
| Maintainer | Stefan Stefanov <stivbio@gmail.com> |
| License | GNU General Public License (v3) |
| Version | 1.4.2 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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