Man pages for stnava/itkImageR
Examples using Rcpp to interface R and ITK

abpBrainExtraction	An ants-based brain extraction script.
abpN4	N4 with previously set parameters based on ants brain...
antsApplyTransforms	A simplified (or full) interface to antsApplyTransforms.
antsImage-class	Class '"antsImage"'
antsImageClone	Image Clone
antsImageRead	Image Read
antsImageWrite	Image Write
antsMotionCorr	Motion Correction
antsRegistration	A simplified (or full) interface to antsRegistration.
as.antsImage	numeric matrix/array to antsImage
as.array	antsImage to numeric array
aslPerfusion	ASL-based Perfusion from PASL, CASL or pCASL.
as.matrix	antsImage to numeric matrix
as.numeric	antsImage to numeric vector
Atropos	FMM Segmentation
blockStimulus	Block stimulus model for FMRI Data
cbf	CBF Computation
Comparison	Relational operators for antsImage
compcor	Simple compcor function.
corw	produces a correlation matrix via weighted correlation.
cvEigenanatomy	Cross-validation method for eigenanatomy decompositions.
eigSeg	Segmentation for eigenanatomy.
Extract	Extract/Replace regions an antsImage
fastwhiten	Simple fastwhitening function.
filterfMRIforNetworkAnalysis	Basic pre-processing for BOLD or ASL-based network analysis.
getCentroids	Convert an image to the geometric centroids of its signal
getfMRInuisanceVariables	Extract generic fMRI nuisance variables for ASL or BOLD
getMask	Get Mask
getMultivariateTemplateCoordinates	Label multivariate components by an anatomical coordinate...
get_perfusion_predictors	Get perfusion predictors
getROIValues	Compute mean value in each ROI label.
getTemplateCoordinates	Define an anatomical coordinate system in a new image based...
hemodynamicRF	Linear Model for FMRI Data
image2ClusterImages	Converts an image to several independent images.
imageFileNames2ImageList	Simple imageFileNames2ImageListing function.
imageListToMatrix	Read Images into a Matrix
ImageMath	Image Math
imagesToMatrix	Read Images into a Matrix
joinEigenanatomy	Simple joinEigenanatomy function.
KellyKapowski	Compute cortical thickness using the DiReCT algorithm.
labelClusters	Simple labelClustering function.
lappend	Simple list append tool
make3ViewPNG	Rotate an existing 3d window into different views.
maskImage	Mask input image by mask image.
matrixToImages	Convert rows of a matrix to images
MeasureMinMaxMean	Measure Min Max Mean
mni2tal	Brett's mni2tal
motion_correction	Motion Correction
N3BiasFieldCorrection	Bias Field Correction
networkEiganat	Convenience wrapper for eigenanatomy decomposition.
pairwiseImageDistanceMatrix	Simple pairwiseImageDistanceMatrix function for images
partialVolumeCorrection	Perform partial volume correction for ASL images.
perfusionregression	Perfusion Regression
phantom_population_study	ANTsR population study using R linear regression.
plotANTsImage	Plotting an image slice or multi-slice with optional color...
plotBasicNetwork	Simple plotBasicNetwork function.
RcppVector	Test
regressProjections	Regression on image set projection
renderImageLabels	3D surface-based rendering of image segmentation labels
renderNetwork	3D surface-based rendering of image ROI-based networks
renderSurfaceFunction	3D surface-based rendering of volume images.
simple_roi_analysis	Perform ROI population analysis between two groups.
simple_voxel_based_analysis	Perform voxel-based population analysis between two groups.
SmoothImage	Smooth an image
sparseDecom	Convenience wrapper for eigenanatomy decomposition.
sparseDecom2	Convenience wrapper for 2-view eigenanatomy decomposition.
sparseRegression	Sparse regression on input images.
splitData	Split data for testing and training
taskFMRI	Simple taskFMRI function.
temporalwhiten	Simple autocorrelation-based temporal whitening function.
ThresholdImage	Theshold Image
timeseriesimage2matrix	Time-series image to matrix
visualizeBlob	Visualize cortical blob
whiten	Simple whitening function.