sunlightwang/SeqGSEA: Gene Set Enrichment Analysis (GSEA) of RNA-Seq Data: integrating differential expression and splicing
The package generally provides methods for gene set enrichment analysis of high-throughput RNA-Seq data by integrating differential expression and splicing. It uses negative binomial distribution to model read count data, which accounts for sequencing biases and biological variation. Based on permutation tests, statistical significance can also be achieved regarding each gene's differential expression and splicing, respectively.
Getting started
Browse package contents
Package details |
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| Author | Xi Wang <Xi.Wang@newcastle.edu.au> |
| Bioconductor views | DifferentialExpression DifferentialSplicing GeneExpression GeneSetEnrichment ImmunoOncology RNASeq Sequencing |
| Maintainer | Xi Wang <Xi.Wang@dkfz.de> |
| License | GPL (>= 3) |
| Version | 1.31.1 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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