estiExonNBstat: Calculate NB-statistics quantifying differential splicing for...
In sunlightwang/SeqGSEA: Gene Set Enrichment Analysis (GSEA) of RNA-Seq Data: integrating differential expression and splicing
Description
Usage
Arguments
Value
Note
Author(s)
References
See Also
Examples
Description
Calculate NB-statistics quantifying differential splicing for individual exons between two groups of samples compared.
Usage
1
estiExonNBstat(RCS)
Arguments
RCS
a ReadCountSet object after running exonTestability.
Value
A ReadCountSet object with the slot featureData updated.
Note
Please run exonTestability before you run this function.
Author(s)
Xi Wang, xi.wang@newcastle.edu.au
References
Weichen Wang, Zhiyi Qin, Zhixing Feng, Xi Wang and Xuegong Zhang (2013). Identifying differentially spliced genes from two groups of RNA-seq samples. Gene, 518(1):164-170.
See Also
exonTestability,
estiGeneNBstat
Examples
1
2
3
4
data(RCS_example, package="SeqGSEA")
RCS_example <- exonTestability(RCS_example, cutoff=5)
RCS_example <- estiExonNBstat(RCS_example)
head(fData(RCS_example))
sunlightwang/SeqGSEA documentation built on Dec. 5, 2020, 5:52 p.m.
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Description Usage Arguments Value Note Author(s) References See Also Examples
Description
Calculate NB-statistics quantifying differential splicing for individual exons between two groups of samples compared.
Usage
1 | estiExonNBstat(RCS)
|
Arguments
RCS |
a ReadCountSet object after running |
Value
A ReadCountSet object with the slot featureData updated.
Note
Please run exonTestability before you run this function.
Author(s)
Xi Wang, xi.wang@newcastle.edu.au
References
Weichen Wang, Zhiyi Qin, Zhixing Feng, Xi Wang and Xuegong Zhang (2013). Identifying differentially spliced genes from two groups of RNA-seq samples. Gene, 518(1):164-170.
See Also
exonTestability,
estiGeneNBstat
Examples
1 2 3 4 | data(RCS_example, package="SeqGSEA")
RCS_example <- exonTestability(RCS_example, cutoff=5)
RCS_example <- estiExonNBstat(RCS_example)
head(fData(RCS_example))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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