GSEAresultTable: Form a table for GSEA results

In sunlightwang/SeqGSEA: Gene Set Enrichment Analysis (GSEA) of RNA-Seq Data: integrating differential expression and splicing

Description

Form a table for GSEA results.

Usage

GSEAresultTable(gene.set, GSDesc = FALSE)

Arguments

gene.set	a SeqGeneSet object after running GSEnrichAnalyze.
GSDesc	logical indicating whether to output gene set descriptions. default: FALSE

Value

A data frame containing columns of GSName, GSSize, ES, ES.pos, pval, FDR, and FWER.

Author(s)

Xi Wang, [e-mail]

See Also

GSEnrichAnalyze, topGeneSets

Examples

data(DEscore, package="SeqGSEA")
data(DSscore, package="SeqGSEA")
gene.score <- geneScore(DEscore, DSscore, method="linear", DEweight = 0.3)
data(DEscore.perm, package="SeqGSEA")
data(DSscore.perm, package="SeqGSEA")
gene.score.perm <- genePermuteScore(DEscore.perm, DSscore.perm, method="linear",  DEweight=0.3)
data(GS_example, package="SeqGSEA")
GS_example <- GSEnrichAnalyze(GS_example, gene.score, gene.score.perm)
head(GSEAresultTable(GS_example))

sunlightwang/SeqGSEA documentation built on Dec. 5, 2020, 5:52 p.m.