exonTestability: Check exon testability
In sunlightwang/SeqGSEA: Gene Set Enrichment Analysis (GSEA) of RNA-Seq Data: integrating differential expression and splicing
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
Check exon testability, filtering out exons with very few (default: 5) read counts
Usage
1
exonTestability(RCS, cutoff = 5)
Arguments
RCS
a ReadCountSet object.
cutoff
exons with read counts less than this cutoff are to be marked as untestable.
Value
a ReadCountSet object with slot fData updated.
Author(s)
Xi Wang, xi.wang@newcastle.edu.au
See Also
Examples
1
2
3
data(RCS_example, package="SeqGSEA")
RCS_example <- exonTestability(RCS_example, cutoff=5)
head(fData(RCS_example))
sunlightwang/SeqGSEA documentation built on Dec. 5, 2020, 5:52 p.m.
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Description Usage Arguments Value Author(s) See Also Examples
Description
Check exon testability, filtering out exons with very few (default: 5) read counts
Usage
1 | exonTestability(RCS, cutoff = 5)
|
Arguments
RCS |
a ReadCountSet object. |
cutoff |
exons with read counts less than this cutoff are to be marked as untestable. |
Value
a ReadCountSet object with slot fData updated.
Author(s)
Xi Wang, xi.wang@newcastle.edu.au
See Also
Examples
1 2 3 | data(RCS_example, package="SeqGSEA")
RCS_example <- exonTestability(RCS_example, cutoff=5)
head(fData(RCS_example))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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